Commit Graph

69 Commits

Author SHA1 Message Date
Jimmy Chen
36d8849813 Add commmand for pruning states (#4835)
## Issue Addressed

Closes #4481. 

(Continuation of #4648)

## Proposed Changes

- [x] Add `lighthouse db prune-states`
- [x] Make it work
- [x] Ensure block roots are handled correctly (to be addressed in 4735)
- [x] Check perf on mainnet/Goerli/Gnosis (takes a few seconds max)
- [x] Run block root healing logic (#4875 ) at the beginning
- [x] Add some tests
- [x] Update docs
- [x] Add `--freezer` flag and other improvements to `lighthouse db inspect`

Co-authored-by: Michael Sproul <michael@sigmaprime.io>
Co-authored-by: Jimmy Chen <jimmy@sigmaprime.io>
Co-authored-by: Michael Sproul <micsproul@gmail.com>
2023-11-03 00:12:19 +00:00
Michael Sproul
c574f8136e Fix block backfill with genesis skip slots (#4820)
## Issue Addressed

Closes #4817.

## Proposed Changes

- Fill in the linear block roots array between 0 and the slot of the first block (e.g. slots 0 and 1 on Holesky).
- Backport the `--freezer`, `--skip` and `--limit` options for `lighthouse db inspect` from tree-states. This allows us to easily view the database corruption of 4817 using `lighthouse db inspect --network holesky --freezer --column bbr --output values --limit 2`.
- Backport the `iter_column_from` change and `MemoryStore` overhaul from tree-states. These are required to enable `lighthouse db inspect`.
- Rework `freezer_upper_limit` to allow state lookups for slots below the `state_lower_limit`. Currently state lookups will fail until state reconstruction completes entirely.

There is a new regression test for the main bug, but no test for the `freezer_upper_limit` fix because we don't currently support running state reconstruction partially (see #3026). This will be fixed once we merge `tree-states`! In lieu of an automated test, I've tested manually on a Holesky node while it was reconstructing.

## Additional Info

Users who backfilled Holesky to slot 0 (e.g. using `--reconstruct-historic-states`) need to either:

- Re-sync from genesis.
- Re-sync using checkpoint sync and the changes from this PR.

Due to the recency of the Holesky genesis, writing a custom pass to fix up broken databases (which would require its own thorough testing) was deemed unnecessary. This is the primary reason for this PR being marked `backwards-incompat`.

This will create few conflicts with Deneb, which I've already resolved on `tree-states-deneb` and will be happy to backport to Deneb once this PR is merged to unstable.
2023-10-27 05:08:49 +00:00
Michael Sproul
9244f7f7bc Improvements to Deneb store upon review (#4693)
* Start testing blob pruning

* Get rid of unnecessary orphaned blob column

* Make random blob tests deterministic

* Test for pruning being blocked by finality

* Fix bugs and test fork boundary

* A few more tweaks to pruning conditions

* Tweak oldest_blob_slot semantics

* Test margin pruning

* Clean up some terminology and lints

* Schema migrations for v18

* Remove FIXME

* Prune blobs on finalization not every slot

* Fix more bugs + tests

* Address review comments
2023-09-25 14:21:54 -04:00
realbigsean
7d468cb487 More deneb cleanup (#4640)
* remove protoc and token from network tests github action

* delete unused beacon chain methods

* downgrade writing blobs to store log

* reduce diff in block import logic

* remove some todo's and deneb built in network

* remove unnecessary error, actually use some added metrics

* remove some metrics, fix missing components on publish funcitonality

* fix status tests

* rename sidecar by root to blobs by root

* clean up some metrics

* remove unnecessary feature gate from attestation subnet tests, clean up blobs by range response code

* pawan's suggestion in `protocol_info`, peer score in matching up batch sync block and blobs

* fix range tests for deneb

* pub block and blob db cache behind the same mutex

* remove unused errs and an empty file

* move sidecar trait to new file

* move types from payload to eth2 crate

* update comment and add flag value name

* make function private again, remove allow unused

* use reth rlp for tx decoding

* fix compile after merge

* rename kzg commitments

* cargo fmt

* remove unused dep

* Update beacon_node/execution_layer/src/lib.rs

Co-authored-by: Pawan Dhananjay <pawandhananjay@gmail.com>

* Update beacon_node/beacon_processor/src/lib.rs

Co-authored-by: Pawan Dhananjay <pawandhananjay@gmail.com>

* pawan's suggestiong for vec capacity

* cargo fmt

* Revert "use reth rlp for tx decoding"

This reverts commit 5181837d81.

* remove reth rlp

---------

Co-authored-by: Pawan Dhananjay <pawandhananjay@gmail.com>
2023-08-20 21:17:17 -04:00
Pawan Dhananjay
18760822fe Fix beta compiler warnings 2023-07-14 13:16:48 -07:00
ethDreamer
46db30416d Implement Overflow LRU Cache for Pending Blobs (#4203)
* All Necessary Objects Implement Encode/Decode

* Major Components for LRUOverflowCache Implemented

* Finish Database Code

* Add Maintenance Methods

* Added Maintenance Service

* Persist Blobs on Shutdown / Reload on Startup

* Address Clippy Complaints

* Add (emum_behaviour = "tag") to ssz_derive

* Convert Encode/Decode Implementations to "tag"

* Started Adding Tests

* Added a ton of tests

* 1 character fix

* Feature Guard Minimal Spec Tests

* Update beacon_node/beacon_chain/src/data_availability_checker.rs

Co-authored-by: realbigsean <seananderson33@GMAIL.com>

* Address Sean's Comments

* Add iter_raw_keys method

* Remove TODOs

---------

Co-authored-by: realbigsean <seananderson33@GMAIL.com>
2023-05-12 10:08:24 -04:00
ethDreamer
d84117c0d0 Removed TODO (#4128) 2023-03-24 17:33:49 -04:00
Pawan Dhananjay
b276af98b7 Rework block processing (#4092)
* introduce availability pending block

* add intoavailableblock trait

* small fixes

* add 'gossip blob cache' and start to clean up processing and transition types

* shard memory blob cache

* Initial commit

* Fix after rebase

* Add gossip verification conditions

* cache cleanup

* general chaos

* extended chaos

* cargo fmt

* more progress

* more progress

* tons of changes, just tryna compile

* everything, everywhere, all at once

* Reprocess an ExecutedBlock on unavailable blobs

* Add sus gossip verification for blobs

* Merge stuff

* Remove reprocessing cache stuff

* lint

* Add a wrapper to allow construction of only valid `AvailableBlock`s

* rename blob arc list to blob list

* merge cleanuo

* Revert "merge cleanuo"

This reverts commit 5e98326878.

* Revert "Revert "merge cleanuo""

This reverts commit 3a4009443a.

* fix rpc methods

* move beacon block and blob to eth2/types

* rename gossip blob cache to data availability checker

* lots of changes

* fix some compilation issues

* fix compilation issues

* fix compilation issues

* fix compilation issues

* fix compilation issues

* fix compilation issues

* cargo fmt

* use a common data structure for block import types

* fix availability check on proposal import

* refactor the blob cache and split the block wrapper into two types

* add type conversion for signed block and block wrapper

* fix beacon chain tests and do some renaming, add some comments

* Partial processing (#4)

* move beacon block and blob to eth2/types

* rename gossip blob cache to data availability checker

* lots of changes

* fix some compilation issues

* fix compilation issues

* fix compilation issues

* fix compilation issues

* fix compilation issues

* fix compilation issues

* cargo fmt

* use a common data structure for block import types

* fix availability check on proposal import

* refactor the blob cache and split the block wrapper into two types

* add type conversion for signed block and block wrapper

* fix beacon chain tests and do some renaming, add some comments

* cargo update (#6)

---------

Co-authored-by: realbigsean <sean@sigmaprime.io>
Co-authored-by: realbigsean <seananderson33@gmail.com>
2023-03-24 17:30:41 -04:00
ethDreamer
d1e653cfdb Update Blob Storage Structure (#4104)
* Initial Changes to Blob Storage

* Add Arc to SignedBlobSidecar Definition
2023-03-21 15:33:06 -04:00
Emilia Hane
89cccfc397 Fix rebase conflicts 2023-02-09 07:46:25 +01:00
Emilia Hane
f971f3a3a2 Fix rebase conflicts 2023-02-09 07:41:38 +01:00
Michael Sproul
ac4b5b580c Fix regression in DB write atomicity 2023-02-08 11:44:45 +01:00
Emilia Hane
6dff69bde9 Atomically update blob info with pruned blobs 2023-02-08 11:44:42 +01:00
Emilia Hane
756c881857 Keep uniform size small keys
Co-authored-by: Michael Sproul <micsproul@gmail.com>
2023-02-08 11:44:40 +01:00
Emilia Hane
d58a30b3de fixup! Store orphan block roots 2023-02-08 11:44:36 +01:00
Emilia Hane
8752deeced Store orphan block roots 2023-02-08 11:44:35 +01:00
Emilia Hane
7bf88c2336 Prune blobs before data availability breakpoint 2023-02-08 11:44:30 +01:00
Emilia Hane
e2a6da4274 Boiler plate code for blobs pruning 2023-02-08 11:44:20 +01:00
realbigsean
438126f19a merge upstream, fix compile errors 2023-01-11 13:52:58 -05:00
realbigsean
98b11bbd3f add historical summaries (#3865)
* add historical summaries

* fix tree hash caching, disable the sanity slots test with fake crypto

* add ssz static HistoricalSummary

* only store historical summaries after capella

* Teach `UpdatePattern` about Capella

* Tidy EF tests

* Clippy

Co-authored-by: Michael Sproul <michael@sigmaprime.io>
2023-01-11 12:40:21 +11:00
Divma
240854750c cleanup: remove unused imports, unusued fields (#3834) 2022-12-23 17:16:10 -05:00
Pawan Dhananjay
29f2ec46d3 Couple blocks and blobs in gossip (#3670)
* Revert "Add more gossip verification conditions"

This reverts commit 1430b561c3.

* Revert "Add todos"

This reverts commit 91efb9d4c7.

* Revert "Reprocess blob sidecar messages"

This reverts commit 21bf3d37cd.

* Add the coupled topic

* Decode SignedBeaconBlockAndBlobsSidecar correctly

* Process Block and Blobs in beacon processor

* Remove extra blob publishing logic from vc

* Remove blob signing in vc

* Ugly hack to compile
2022-11-01 10:28:21 -04:00
realbigsean
ba16a037a3 cleanup 2022-10-04 09:34:05 -04:00
realbigsean
e81dbbfea4 compile 2022-10-03 21:48:02 -04:00
Daniel Knopik
750c594f5f forgor something 2022-09-17 21:38:57 +02:00
Daniel Knopik
76572db9d5 add network config 2022-09-17 20:55:21 +02:00
Daniel Knopik
d4d40be870 storable blobs 2022-09-17 15:58:52 +02:00
ethDreamer
034260bd99 Initial Commit of Retrospective OTB Verification (#3372)
## Issue Addressed

* #2983 

## Proposed Changes

Basically followed the [instructions laid out here](https://github.com/sigp/lighthouse/issues/2983#issuecomment-1062494947)


Co-authored-by: Paul Hauner <paul@paulhauner.com>
Co-authored-by: ethDreamer <37123614+ethDreamer@users.noreply.github.com>
2022-07-30 00:22:38 +00:00
Paul Hauner
be4e261e74 Use async code when interacting with EL (#3244)
## Overview

This rather extensive PR achieves two primary goals:

1. Uses the finalized/justified checkpoints of fork choice (FC), rather than that of the head state.
2. Refactors fork choice, block production and block processing to `async` functions.

Additionally, it achieves:

- Concurrent forkchoice updates to the EL and cache pruning after a new head is selected.
- Concurrent "block packing" (attestations, etc) and execution payload retrieval during block production.
- Concurrent per-block-processing and execution payload verification during block processing.
- The `Arc`-ification of `SignedBeaconBlock` during block processing (it's never mutated, so why not?):
    - I had to do this to deal with sending blocks into spawned tasks.
    - Previously we were cloning the beacon block at least 2 times during each block processing, these clones are either removed or turned into cheaper `Arc` clones.
    - We were also `Box`-ing and un-`Box`-ing beacon blocks as they moved throughout the networking crate. This is not a big deal, but it's nice to avoid shifting things between the stack and heap.
    - Avoids cloning *all the blocks* in *every chain segment* during sync.
    - It also has the potential to clean up our code where we need to pass an *owned* block around so we can send it back in the case of an error (I didn't do much of this, my PR is already big enough 😅)
- The `BeaconChain::HeadSafetyStatus` struct was removed. It was an old relic from prior merge specs.

For motivation for this change, see https://github.com/sigp/lighthouse/pull/3244#issuecomment-1160963273

## Changes to `canonical_head` and `fork_choice`

Previously, the `BeaconChain` had two separate fields:

```
canonical_head: RwLock<Snapshot>,
fork_choice: RwLock<BeaconForkChoice>
```

Now, we have grouped these values under a single struct:

```
canonical_head: CanonicalHead {
  cached_head: RwLock<Arc<Snapshot>>,
  fork_choice: RwLock<BeaconForkChoice>
} 
```

Apart from ergonomics, the only *actual* change here is wrapping the canonical head snapshot in an `Arc`. This means that we no longer need to hold the `cached_head` (`canonical_head`, in old terms) lock when we want to pull some values from it. This was done to avoid deadlock risks by preventing functions from acquiring (and holding) the `cached_head` and `fork_choice` locks simultaneously.

## Breaking Changes

### The `state` (root) field in the `finalized_checkpoint` SSE event

Consider the scenario where epoch `n` is just finalized, but `start_slot(n)` is skipped. There are two state roots we might in the `finalized_checkpoint` SSE event:

1. The state root of the finalized block, which is `get_block(finalized_checkpoint.root).state_root`.
4. The state root at slot of `start_slot(n)`, which would be the state from (1), but "skipped forward" through any skip slots.

Previously, Lighthouse would choose (2). However, we can see that when [Teku generates that event](de2b2801c8/data/beaconrestapi/src/main/java/tech/pegasys/teku/beaconrestapi/handlers/v1/events/EventSubscriptionManager.java (L171-L182)) it uses [`getStateRootFromBlockRoot`](de2b2801c8/data/provider/src/main/java/tech/pegasys/teku/api/ChainDataProvider.java (L336-L341)) which uses (1).

I have switched Lighthouse from (2) to (1). I think it's a somewhat arbitrary choice between the two, where (1) is easier to compute and is consistent with Teku.

## Notes for Reviewers

I've renamed `BeaconChain::fork_choice` to `BeaconChain::recompute_head`. Doing this helped ensure I broke all previous uses of fork choice and I also find it more descriptive. It describes an action and can't be confused with trying to get a reference to the `ForkChoice` struct.

I've changed the ordering of SSE events when a block is received. It used to be `[block, finalized, head]` and now it's `[block, head, finalized]`. It was easier this way and I don't think we were making any promises about SSE event ordering so it's not "breaking".

I've made it so fork choice will run when it's first constructed. I did this because I wanted to have a cached version of the last call to `get_head`. Ensuring `get_head` has been run *at least once* means that the cached values doesn't need to wrapped in an `Option`. This was fairly simple, it just involved passing a `slot` to the constructor so it knows *when* it's being run. When loading a fork choice from the store and a slot clock isn't handy I've just used the `slot` that was saved in the `fork_choice_store`. That seems like it would be a faithful representation of the slot when we saved it.

I added the `genesis_time: u64` to the `BeaconChain`. It's small, constant and nice to have around.

Since we're using FC for the fin/just checkpoints, we no longer get the `0x00..00` roots at genesis. You can see I had to remove a work-around in `ef-tests` here: b56be3bc2. I can't find any reason why this would be an issue, if anything I think it'll be better since the genesis-alias has caught us out a few times (0x00..00 isn't actually a real root). Edit: I did find a case where the `network` expected the 0x00..00 alias and patched it here: 3f26ac3e2.

You'll notice a lot of changes in tests. Generally, tests should be functionally equivalent. Here are the things creating the most diff-noise in tests:
- Changing tests to be `tokio::async` tests.
- Adding `.await` to fork choice, block processing and block production functions.
- Refactor of the `canonical_head` "API" provided by the `BeaconChain`. E.g., `chain.canonical_head.cached_head()` instead of `chain.canonical_head.read()`.
- Wrapping `SignedBeaconBlock` in an `Arc`.
- In the `beacon_chain/tests/block_verification`, we can't use the `lazy_static` `CHAIN_SEGMENT` variable anymore since it's generated with an async function. We just generate it in each test, not so efficient but hopefully insignificant.

I had to disable `rayon` concurrent tests in the `fork_choice` tests. This is because the use of `rayon` and `block_on` was causing a panic.

Co-authored-by: Mac L <mjladson@pm.me>
2022-07-03 05:36:50 +00:00
Michael Sproul
bcdd960ab1 Separate execution payloads in the DB (#3157)
## Proposed Changes

Reduce post-merge disk usage by not storing finalized execution payloads in Lighthouse's database.

⚠️ **This is achieved in a backwards-incompatible way for networks that have already merged** ⚠️. Kiln users and shadow fork enjoyers will be unable to downgrade after running the code from this PR. The upgrade migration may take several minutes to run, and can't be aborted after it begins.

The main changes are:

- New column in the database called `ExecPayload`, keyed by beacon block root.
- The `BeaconBlock` column now stores blinded blocks only.
- Lots of places that previously used full blocks now use blinded blocks, e.g. analytics APIs, block replay in the DB, etc.
- On finalization:
    - `prune_abanonded_forks` deletes non-canonical payloads whilst deleting non-canonical blocks.
    - `migrate_db` deletes finalized canonical payloads whilst deleting finalized states.
- Conversions between blinded and full blocks are implemented in a compositional way, duplicating some work from Sean's PR #3134.
- The execution layer has a new `get_payload_by_block_hash` method that reconstructs a payload using the EE's `eth_getBlockByHash` call.
   - I've tested manually that it works on Kiln, using Geth and Nethermind.
   - This isn't necessarily the most efficient method, and new engine APIs are being discussed to improve this: https://github.com/ethereum/execution-apis/pull/146.
   - We're depending on the `ethers` master branch, due to lots of recent changes. We're also using a workaround for https://github.com/gakonst/ethers-rs/issues/1134.
- Payload reconstruction is used in the HTTP API via `BeaconChain::get_block`, which is now `async`. Due to the `async` fn, the `blocking_json` wrapper has been removed.
- Payload reconstruction is used in network RPC to serve blocks-by-{root,range} responses. Here the `async` adjustment is messier, although I think I've managed to come up with a reasonable compromise: the handlers take the `SendOnDrop` by value so that they can drop it on _task completion_ (after the `fn` returns). Still, this is introducing disk reads onto core executor threads, which may have a negative performance impact (thoughts appreciated).

## Additional Info

- [x] For performance it would be great to remove the cloning of full blocks when converting them to blinded blocks to write to disk. I'm going to experiment with a `put_block` API that takes the block by value, breaks it into a blinded block and a payload, stores the blinded block, and then re-assembles the full block for the caller.
- [x] We should measure the latency of blocks-by-root and blocks-by-range responses.
- [x] We should add integration tests that stress the payload reconstruction (basic tests done, issue for more extensive tests: https://github.com/sigp/lighthouse/issues/3159)
- [x] We should (manually) test the schema v9 migration from several prior versions, particularly as blocks have changed on disk and some migrations rely on being able to load blocks.

Co-authored-by: Paul Hauner <paul@paulhauner.com>
2022-05-12 00:42:17 +00:00
Michael Sproul
41e7a07c51 Add lighthouse db command (#3129)
## Proposed Changes

Add a `lighthouse db` command with three initial subcommands:

- `lighthouse db version`: print the database schema version.
- `lighthouse db migrate --to N`: manually upgrade (or downgrade!) the database to a different version.
- `lighthouse db inspect --column C`: log the key and size in bytes of every value in a given `DBColumn`.

This PR lays the groundwork for other changes, namely:

- Mark's fast-deposit sync (https://github.com/sigp/lighthouse/pull/2915), for which I think we should implement a database downgrade (from v9 to v8).
- My `tree-states` work, which already implements a downgrade (v10 to v8).
- Standalone purge commands like `lighthouse db purge-dht` per https://github.com/sigp/lighthouse/issues/2824.

## Additional Info

I updated the `strum` crate to 0.24.0, which necessitated some changes in the network code to remove calls to deprecated methods.

Thanks to @winksaville for the motivation, and implementation work that I used as a source of inspiration (https://github.com/sigp/lighthouse/pull/2685).
2022-04-01 00:58:59 +00:00
Michael Sproul
a290a3c537 Add configurable block replayer (#2863)
## Issue Addressed

Successor to #2431

## Proposed Changes

* Add a `BlockReplayer` struct to abstract over the intricacies of calling `per_slot_processing` and `per_block_processing` while avoiding unnecessary tree hashing.
* Add a variant of the forwards state root iterator that does not require an `end_state`.
* Use the `BlockReplayer` when reconstructing states in the database. Use the efficient forwards iterator for frozen states.
* Refactor the iterators to remove `Arc<HotColdDB>` (this seems to be neater than making _everything_ an `Arc<HotColdDB>` as I did in #2431).

Supplying the state roots allow us to avoid building a tree hash cache at all when reconstructing historic states, which saves around 1 second flat (regardless of `slots-per-restore-point`). This is a small percentage of worst-case state load times with 200K validators and SPRP=2048 (~15s vs ~16s) but a significant speed-up for more frequent restore points: state loads with SPRP=32 should be now consistently <500ms instead of 1.5s (a ~3x speedup).

## Additional Info

Required by https://github.com/sigp/lighthouse/pull/2628
2021-12-21 06:30:52 +00:00
Michael Sproul
ed1fc7cca6 Fix I/O atomicity issues with checkpoint sync (#2671)
## Issue Addressed

This PR addresses an issue found by @YorickDowne during testing of v2.0.0-rc.0.

Due to a lack of atomic database writes on checkpoint sync start-up, it was possible for the database to get into an inconsistent state from which it couldn't recover without `--purge-db`. The core of the issue was that the store's anchor info was being stored _before_ the `PersistedBeaconChain`. If a crash occured so that anchor info was stored but _not_ the `PersistedBeaconChain`, then on restart Lighthouse would think the database was unitialized and attempt to compare-and-swap a `None` value, but would actually find the stale info from the previous run.

## Proposed Changes

The issue is fixed by writing the anchor info, the split point, and the `PersistedBeaconChain` atomically on start-up. Some type-hinting ugliness was required, which could possibly be cleaned up in future refactors.
2021-10-05 03:53:17 +00:00
Michael Sproul
9667dc2f03 Implement checkpoint sync (#2244)
## Issue Addressed

Closes #1891
Closes #1784

## Proposed Changes

Implement checkpoint sync for Lighthouse, enabling it to start from a weak subjectivity checkpoint.

## Additional Info

- [x] Return unavailable status for out-of-range blocks requested by peers (#2561)
- [x] Implement sync daemon for fetching historical blocks (#2561)
- [x] Verify chain hashes (either in `historical_blocks.rs` or the calling module)
- [x] Consistency check for initial block + state
- [x] Fetch the initial state and block from a beacon node HTTP endpoint
- [x] Don't crash fetching beacon states by slot from the API
- [x] Background service for state reconstruction, triggered by CLI flag or API call.

Considered out of scope for this PR:

- Drop the requirement to provide the `--checkpoint-block` (this would require some pretty heavy refactoring of block verification)


Co-authored-by: Diva M <divma@protonmail.com>
2021-09-22 00:37:28 +00:00
realbigsean
303deb9969 Rust 1.54.0 lints (#2483)
## Issue Addressed

N/A

## Proposed Changes

- Removing a bunch of unnecessary references
- Updated `Error::VariantError` to `Error::Variant`
- There were additional enum variant lints that I ignored, because I thought our variant names were fine
- removed `MonitoredValidator`'s `pubkey` field, because I couldn't find it used anywhere. It looks like we just use the string version of the pubkey (the `id` field) if there is no index

## Additional Info



Co-authored-by: realbigsean <seananderson33@gmail.com>
2021-07-30 01:11:47 +00:00
realbigsean
b84ff9f793 rust 1.53.0 updates (#2411)
## Issue Addressed

`make lint` failing on rust 1.53.0.

## Proposed Changes

1.53.0 updates

## Additional Info

I haven't figure out why yet, we were now hitting the recursion limit in a few crates. So I had to add `#![recursion_limit = "256"]` in a few places


Co-authored-by: realbigsean <seananderson33@gmail.com>
Co-authored-by: Michael Sproul <michael@sigmaprime.io>
2021-06-18 05:58:01 +00:00
Pawan Dhananjay
fdaeec631b Monitoring service api (#2251)
## Issue Addressed

N/A

## Proposed Changes

Adds a client side api for collecting system and process metrics and pushing it to a monitoring service.
2021-05-26 05:58:41 +00:00
Michael Sproul
363f15f362 Use the database to persist the pubkey cache (#2234)
## Issue Addressed

Closes #1787

## Proposed Changes

* Abstract the `ValidatorPubkeyCache` over a "backing" which is either a file (legacy), or the database.
* Implement a migration from schema v2 to schema v3, whereby the contents of the cache file are copied to the DB, and then the file is deleted. The next release to include this change must be a minor version bump, and we will need to warn users of the inability to downgrade (this is our first DB schema change since mainnet genesis).
* Move the schema migration code from the `store` crate into the `beacon_chain` crate so that it can access the datadir and the `ValidatorPubkeyCache`, etc. It gets injected back into the `store` via a closure (similar to what we do in fork choice).
2021-03-04 01:25:12 +00:00
Michael Sproul
556190ff46 Compact database on finalization (#1871)
## Issue Addressed

Closes #1866

## Proposed Changes

* Compact the database on finalization. This removes the deleted states from disk completely. Because it happens in the background migrator, it doesn't block other database operations while it runs. On my Medalla node it took about 1 minute and shrank the database from 90GB to 9GB.
* Fix an inefficiency in the pruning algorithm where it would always use the genesis checkpoint as the `old_finalized_checkpoint` when running for the first time after start-up. This would result in loading lots of states one-at-a-time back to genesis, and storing a lot of block roots in memory. The new code stores the old finalized checkpoint on disk and only uses genesis if no checkpoint is already stored. This makes it both backwards compatible _and_ forwards compatible -- no schema change required!
* Introduce two new `INFO` logs to indicate when pruning has started and completed. Users seem to want to know this information without enabling debug logs!
2020-11-09 07:02:21 +00:00
Michael Sproul
acd49d988d Implement database temp states to reduce memory usage (#1798)
## Issue Addressed

Closes #800
Closes #1713

## Proposed Changes

Implement the temporary state storage algorithm described in #800. Specifically:

* Add `DBColumn::BeaconStateTemporary`, for storing 0-length temporary marker values.
* Store intermediate states immediately as they are created, marked temporary. Delete the temporary flag if the block is processed successfully.
* Add a garbage collection process to delete leftover temporary states on start-up.
* Bump the database schema version to 2 so that a DB with temporary states can't accidentally be used with older versions of the software. The auto-migration is a no-op, but puts in place some infra that we can use for future migrations (e.g. #1784)

## Additional Info

There are two known race conditions, one potentially causing permanent faults (hopefully rare), and the other insignificant.

### Race 1: Permanent state marked temporary

EDIT: this has been fixed by the addition of a lock around the relevant critical section

There are 2 threads that are trying to store 2 different blocks that share some intermediate states (e.g. they both skip some slots from the current head). Consider this sequence of events:

1. Thread 1 checks if state `s` already exists, and seeing that it doesn't, prepares an atomic commit of `(s, s_temporary_flag)`.
2. Thread 2 does the same, but also gets as far as committing the state txn, finishing the processing of its block, and _deleting_ the temporary flag.
3. Thread 1 is (finally) scheduled again, and marks `s` as temporary with its transaction.
4.
    a) The process is killed, or thread 1's block fails verification and the temp flag is not deleted. This is a permanent failure! Any attempt to load state `s` will fail... hope it isn't on the main chain! Alternatively (4b) happens...
    b) Thread 1 finishes, and re-deletes the temporary flag. In this case the failure is transient, state `s` will disappear temporarily, but will come back once thread 1 finishes running.

I _hope_ that steps 1-3 only happen very rarely, and 4a even more rarely. It's hard to know

This once again begs the question of why we're using LevelDB (#483), when it clearly doesn't care about atomicity! A ham-fisted fix would be to wrap the hot and cold DBs in locks, which would bring us closer to how other DBs handle read-write transactions. E.g. [LMDB only allows one R/W transaction at a time](https://docs.rs/lmdb/0.8.0/lmdb/struct.Environment.html#method.begin_rw_txn).

### Race 2: Temporary state returned from `get_state`

I don't think this race really matters, but in `load_hot_state`, if another thread stores a state between when we call `load_state_temporary_flag` and when we call `load_hot_state_summary`, then we could end up returning that state even though it's only a temporary state. I can't think of any case where this would be relevant, and I suspect if it did come up, it would be safe/recoverable (having data is safer than _not_ having data).

This could be fixed by using a LevelDB read snapshot, but that would require substantial changes to how we read all our values, so I don't think it's worth it right now.
2020-10-23 01:27:51 +00:00
Michael Sproul
22aedda1be Add database schema versioning (#1688)
## Issue Addressed

Closes #673

## Proposed Changes

Store a schema version in the database so that future releases can check they're running against a compatible database version. This would also enable automatic migration on breaking database changes, but that's left as future work.

The database config is also stored in the database so that the `slots_per_restore_point` value can be checked for consistency, which closes #673
2020-10-01 11:12:36 +10:00
Adam Szkoda
d9f4819fe0 Alternative (to BeaconChainHarness) BeaconChain testing API (#1380)
The PR:

* Adds the ability to generate a crucial test scenario that isn't possible with `BeaconChainHarness` (i.e. two blocks occupying the same slot; previously forks necessitated skipping slots):

![image](https://user-images.githubusercontent.com/165678/88195404-4bce3580-cc40-11ea-8c08-b48d2e1d5959.png)

* New testing API: Instead of repeatedly calling add_block(), you generate a sorted `Vec<Slot>` and leave it up to the framework to generate blocks at those slots.
* Jumping backwards to an earlier epoch is a hard error, so that tests necessarily generate blocks in a epoch-by-epoch manner.
* Configures the test logger so that output is printed on the console in case a test fails.  The logger also plays well with `--nocapture`, contrary to the existing testing framework
* Rewrites existing fork pruning tests to use the new API
* Adds a tests that triggers finalization at a non epoch boundary slot
* Renamed `BeaconChainYoke` to `BeaconChainTestingRig` because the former has been too confusing
* Fixed multiple tests (e.g. `block_production_different_shuffling_long`, `delete_blocks_and_states`, `shuffling_compatible_simple_fork`) that relied on a weird (and accidental) feature of the old `BeaconChainHarness` that attestations aren't produced for epochs earlier than the current one, thus masking potential bugs in test cases.

Co-authored-by: Michael Sproul <michael@sigmaprime.io>
2020-08-26 09:24:55 +00:00
Adam Szkoda
c7f47af9fb Harden the freezing procedure against failures (#1323)
* Enable logging in tests

* Migrate states to the freezer atomically
2020-07-03 09:47:31 +10:00
Adam Szkoda
536728b975 Write new blocks and states to the database atomically (#1285)
* Mostly atomic put_state()
* Reduce number of vec allocations
* Make crucial db operations atomic
* Save restore points
* Remove StateBatch
* Merge two HotColdDB impls
* Further reduce allocations
* Review feedback
* Silence clippy warning
2020-07-01 12:45:57 +10:00
Adam Szkoda
9db0c28051 Make key value storage abstractions more accurate (#1267)
* Layer do_atomically() abstractions properly

* Reduce allocs and DRY get_key_for_col()

* Parameterize HotColdDB with hot and cold item stores

* -impl Store for MemoryStore

* Replace Store uses with HotColdDB

* Ditch Store trait

* cargo fmt

* Style fix

* Readd missing dep that broke the build
2020-06-16 11:34:04 +10:00
Adam Szkoda
7f036a6e95 Add error handling to iterators (#1243)
* Add error handling to iterators

* Review feedback

* Leverage itertools::process_results() in few places
2020-06-10 09:55:44 +10:00
Adam Szkoda
91cb14ac41 Clean up database abstractions (#1200)
* Remove redundant method

* Pull out a method out of a struct

* More precise db access abstractions

* Move fake trait method out of it

* cargo fmt

* Fix compilation error after refactoring

* Move another fake method out the Store trait

* Get rid of superfluous method

* Fix refactoring bug

* Rename: SimpleStoreItem -> StoreItem

* Get rid of the confusing DiskStore type alias

* Get rid of SimpleDiskStore type alias

* Correction: A method took both self and a ref to Self
2020-06-01 08:13:49 +10:00
Adam Szkoda
919c81fe7d Ditch StoreItem trait (#1185) 2020-05-25 10:26:54 +10:00
Adam Szkoda
d79e07902e Relax PartialEq constraint on error enums (#1179) 2020-05-21 10:21:44 +10:00
Adam Szkoda
59ead67f76 Race condition fix + Reliability improvements around forks pruning (#1132)
* Improve error handling in block iteration

* Introduce atomic DB operations

* Fix race condition

An invariant was violated:  For every block hash in head_tracker, that
block is accessible from the store.
2020-05-16 13:23:32 +10:00